Back قاعدة بيانات توجهات البروتينات في الأغشية Arabic Orientations of Proteins in Membranes database English OPM (base de données) French Orientations of Proteins in Membranes Galician Orientations of Proteins in Membranes database Japanese Baza podataka orijentacija proteina u membranama Serbian

Baza podataka orijentacija proteina u membranama

Periferni protein iz OPM baze podataka (P40phox PX domen NADPH oksidaze). Srednja ravan lipidnog dvosloja - srne tačke. Granica ugljenovodoničnog centralnog regiona - plave tačke (intracelularna strana). Slog lipidnih fosfata - žute tačke.

Baza podataka orijentacija proteina u membranama (engl. Orientations of Proteins in Membranes, OPM) sadrži prostorne orijentacije proteinskih tri-dimenzionalnih struktura u odnosu na lipidni dvosloj.[1][2][3] Ova baza podatak je bila korišćena u eksperimentalnim i teoretskim studijama za membranu-vezanih proteina.[4][5][6][7][8]

  1. ↑ Lomize, Mikhail A.; Lomize, Andrei L; Pogozheva, Irina D.; Mosberg, Henry I. (2006). „OPM: Orientations of Proteins in Membranes database” (PDF). Bioinformatics 22 (5): 623–625. DOI:10.1093/bioinformatics/btk023. PMID 16397007. 
  2. ↑ Lomize, Andrei L; Pogozheva, Irina D.; Lomize, Mikhail A.; Mosberg, Henry I. (2006). „Positioning of proteins in membranes: A computational approach” (PDF). Protein Science 15 (6): 1318–1333. DOI:10.1110/ps.062126106. PMC 2242528. PMID 16731967. 
  3. ↑ Lomize, Andrei L; Pogozheva, Irina D.; Lomize, Mikhail A.; Mosberg, Henry I. (2007). „The role of hydrophobic interactions in positioning of peripheral proteins in membranes” (PDF). BMC Structural Biology 7 (44): 44. DOI:10.1186/1472-6807-7-44. PMC 1934363. PMID 17603894. 
  4. ↑ Park, Yungki; Helms, Volkhard (2007). „On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins”. Bioinformatics 23 (6): 701–708. DOI:10.1093/bioinformatics/btl653. PMID 17237049. 
  5. ↑ Marsh, Derek; Jost, Micha; Peggion, Cristina; Toniolo, Claudio (2007). „TOAC spin labels in the backbone of alamethicin: EPR studies in lipid membranes”. Biophysical Journal 92 (2): 473–481. DOI:10.1529/biophysj.106.092775. PMC 1751395. PMID 17056731. 
  6. ↑ Punta, Marco; Forrest, Lucy R.; Bigelow, Henry; Kernytsky, Andrew; Liu, Jinfeng; Rost, Burkhard (2007). „Membrane protein prediction methods”. Methods 41 (4): 460–474. DOI:10.1016/j.ymeth.2006.07.026. PMC 1934899. PMID 17367718. 
  7. ↑ Cherezov, V; Yamashita, E; Liu, W; Zhalnina, M; Cramer, WA; Caffrey, M (8 December 2006). „In Meso Structure of the Cobalamin Transporter, BtuB, at 1.95 Ångstrom Resolution”. J. Mol. Biol. 364 (4): 716–734. DOI:10.1016/j.jmb.2006.09.022. PMC 1808586. PMID 17028020. 
  8. ↑ Páli, Tibor; Bashtovyy, Denys; Marsh, Derek (2006). „Stoichiometry of lipid interactions with transmembrane proteins - Deduced from the 3D structures”. Protein Sci. 15 (5): 1153–1161. DOI:10.1110/ps.052021406. PMC 2242517. PMID 16641489. 
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